Gene Locus Plot with Gene Annotations
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Documentation for package ‘locuszoomr’ version 0.3.0
Help Pages
| eqtl_plot | Locus eQTL plot |
| genetracks | Plot gene tracks |
| genetracks_grob | Create gene tracks grob |
| genetrack_ly | Gene tracks using 'plotly' |
| gg_addgenes | Add gene tracks to a ggplot2 plot |
| gg_genetracks | Plot gene tracks |
| gg_scatter | Locus scatter plot using ggplot2 |
| line_plot | Locus line plot |
| link_eqtl | Obtain GTEx eQTL data via LDlinkR |
| link_LD | Obtain LD at a locus from LDlink |
| link_recomb | Query UCSC for Recombination data |
| locus | Create locus object for plotting |
| locus_ggplot | Locus plot using ggplot2 |
| locus_plot | Locus plot |
| locus_plotly | Locus plotly |
| multi_layout | Layout multiple locus plots |
| overlay_plot | Plot overlaying eQTL and GWAS data |
| quick_peak | Fast peak finder in GWAS data |
| scatter_plot | Locus scatter plot |
| scatter_plotly | Locus scatter plotly |
| set_layers | Set up a column of multiple plots |
| SLE_gwas_sub | SLE GWAS data subset |