Last updated on 2024-05-20 07:52:29 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| ABCoptim | 12 | ||
| aphylo | 9 | 3 | |
| ergmito | 3 | 9 | |
| fmcmc | 12 | ||
| googlePublicData | 12 | ||
| netdiffuseR | 1 | 6 | 5 |
| netplot | 12 | ||
| rgexf | 12 | ||
| slurmR | 12 |
Current CRAN status: OK: 12
Current CRAN status: NOTE: 9, OK: 3
Version: 0.3-3
Check: Rd files
Result: NOTE
checkRd: (-1) aphylo-class.Rd:28: Lost braces; missing escapes or markup?
28 | \item{tip.type, node.type}{Integer vectors with values {0,1}. 0 denotes duplication node and 1 speciation node. This is used in \link{LogLike}.}
| ^
checkRd: (-1) raphylo.Rd:33: Lost braces; missing escapes or markup?
33 | \item{tip.type, node.type}{Integer vectors with values {0,1}. 0 denotes duplication node and 1 speciation node. This is used in \link{LogLike}.}
| ^
checkRd: (-1) sim_fun_on_tree.Rd:24: Lost braces; missing escapes or markup?
24 | \item{tip.type, node.type}{Integer vectors with values {0,1}. 0 denotes duplication node and 1 speciation node. This is used in \link{LogLike}.}
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64
Version: 0.3-3
Check: HTML version of manual
Result: NOTE
Found the following HTML validation problems:
mislabel.html:25:1 (mislabel.Rd:20): Warning: trimming empty <p>
raphylo.html:25:1 (raphylo.Rd:57): Warning: trimming empty <p>
sim_fun_on_tree.html:25:1 (sim_fun_on_tree.Rd:50): Warning: trimming empty <p>
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64
Current CRAN status: NOTE: 3, OK: 9
Version: 0.3-1
Check: installed package size
Result: NOTE
installed size is 5.6Mb
sub-directories of 1Mb or more:
libs 4.2Mb
Flavors: r-release-macos-arm64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: OK: 12
Current CRAN status: OK: 12
Current CRAN status: ERROR: 1, NOTE: 6, OK: 5
Version: 1.22.6
Check: examples
Result: ERROR
Running examples in ‘netdiffuseR-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: exposure
> ### Title: Ego exposure
> ### Aliases: exposure
> ### Keywords: univar
>
> ### ** Examples
>
> # Calculating lagged exposure -----------------------------------------------
>
> set.seed(8)
> graph <- rdiffnet(20, 4)
Warning in (function (graph, p, algorithm = "endpoints", both.ends = FALSE, :
The option -copy.first- is set to TRUE. In this case, the first graph will be treated as a baseline, and thus, networks after T=1 will be replaced with T-1.
>
> expo0 <- exposure(graph)
> expo1 <- exposure(graph, lags = 1)
>
> # These should be equivalent
> stopifnot(all(expo0[, -4] == expo1[, -1])) # No stop!
>
>
> # Calculating the exposure based on Structural Equivalence ------------------
> set.seed(113132)
> graph <- rdiffnet(100, 4)
Warning in (function (graph, p, algorithm = "endpoints", both.ends = FALSE, :
The option -copy.first- is set to TRUE. In this case, the first graph will be treated as a baseline, and thus, networks after T=1 will be replaced with T-1.
>
> SE <- lapply(struct_equiv(graph), "[[", "SE")
*** caught segfault ***
address (nil), cause 'unknown'
Traceback:
1: .TM.repl.i.mat(as(x, "TsparseMatrix"), i = i, value = value)
2: .class1(object)
3: as(.TM.repl.i.mat(as(x, "TsparseMatrix"), i = i, value = value), "CsparseMatrix")
4: `[<-`(`*tmp*`, cbind(1:nrow(z_ik), ids[, 1]), value = 0)
5: `[<-`(`*tmp*`, cbind(1:nrow(z_ik), ids[, 1]), value = 0)
6: euclidean_distance(gdist)
7: struct_equiv_new(geod, v)
8: struct_equiv.dgCMatrix(methods::as(graph[[i]], "dgCMatrix"), v, inf.replace, groupvar, ...)
9: struct_equiv.list(graph$graph, v, inf.replace, groupvar, ...)
10: struct_equiv(graph)
11: lapply(struct_equiv(graph), "[[", "SE")
An irrecoverable exception occurred. R is aborting now ...
Segmentation fault
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.22.6
Flags: --no-vignettes
Check: installed package size
Result: NOTE
installed size is 5.8Mb
sub-directories of 1Mb or more:
doc 2.5Mb
libs 1.5Mb
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 1.22.6
Check: installed package size
Result: NOTE
installed size is 9.9Mb
sub-directories of 1Mb or more:
doc 2.5Mb
libs 5.5Mb
Flavors: r-release-macos-arm64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: OK: 12
Current CRAN status: OK: 12
Current CRAN status: OK: 12